Publications

A more comprehensive list of publications is available at ORCID and ResearchGate.

Kancherla J, Zhang A, Gottfried B and Bravo HC. Epiviz Web Components: reusable and extensible component library to visualize functional genomic datasets. F1000Research 2018, 7:1096 (doi: 10.12688/f1000research.15433.1)
(*equal contribution) Justin Wagner*, Florin Chelaru*, Jayaram Kancherla*, Joseph N Paulson*, Alexander Zhang, Victor Felix, Anup Mahurkar, Niklas Elmqvist, Héctor Corrada Bravo; Metaviz: interactive statistical and visual analysis of metagenomic data, Nucleic Acids Research, Volume 46, Issue 6, 6 April 2018, Pages 2777–2787, http://doi.org/10.1093/nar/gky136
Gary Ginsberg, Suryanarayana V Vulimiri, Yu-Sheng Lin, Jayaram Kancherla, Brenda Foos & Babasaheb Sonawane (2017) A framework and case studies for evaluation of enzyme ontogeny in children’s health risk evaluation, Journal of Toxicology and Environmental Health, Part A, 80:10-12, 569-593, DOI: 10.1080/15287394.2017.1369915
Collaborative Estrogen Receptor Prediction Project for EDSP Prioritization. Environmental Health Perspectives (2016) http://dx.doi.org/10.1289/ehp.1510267
The ToxCast Chemical Landscape: Paving the Road to 21st Century Toxicology. Chemical Research in Toxicology (2016) DOI: 10.1021/acs.chemrestox.6b00135

BOOK CHAPTERS

Kanchana Padmanabhan, Brent Harrison, Kevin Wilson, Michael L. Warren, Jayaram Kancherla, Katie Bright, Justin Mosiman, Hieu Phung, Benjamin Miller, and Sam Shamseldin, 2013. Cluster Analysis, Practical Graph Mining with R, CRC Press. ISBN: 9781439860847

Interactive visualization and data analysis with epiviz web components (Differential Gene Expression analysis using minfi), Jayaram Kancherla, Hector Corrada Bravo, Brian Gottfried. BioC 2017, July 27-28, Dana Farber Cancer Institute, Boston, MA - Web Link
Interactive visualization with epiviz. Héctor Corrada Bravo, Jayaram Kancherla, Justin Wagner, Deok Park. BioC 2016, June 25-26, Stanford University, Stanford, CA - Web Link

Richard, A., C. Grulke, I. Thillainadarajah, K. Mansouri, J. Kancherla, R. Judson, A. Williams., 2015. EPAs DSSTox Chemical Database: A Resource for the Non-Targeted Testing Community. EPA NTA workshop. August 18-19, RTP, NC – Web Link
Mansouri, K., Kancherla J., Richard A., Judson R., 2015. EDSP Prioritization: Collaborative Estrogen Receptor Activity Prediction (CERAPP). Society of Toxicology 54th Annual Meeting. March 22-26, San Diego, CA. (Poster) – Web Link
Strope C.L., Mansouri K., Kancherla J., Stevens C., Wambaugh J.F., 2014. Throughput Pharmacokinetic Modeling Using Computationally Predicted Parameter Values: Dissociation Constants. US EPA –NCCT, Second ToxCast Data Summit, September 29-30, Durham, NC (Poster) – Web Link
Kancherla J., Mansouri K., Truong H., Richard A.M., Judson R., 2014. ACToR Chemical Structure processing using Open Source Cheminformatics Libraries. Society of Toxicology, Future Tox II National Meeting. January 16-17, Chapel Hill, NC. (Poster) – Web Link
Vulimiri S.V., Kancherla J., Lin YS., Ginsberg G., Foos B., Sonawane B., 2014. Scoping the need for PBPK modeling of Child-Adult Metabolism Differences: Case Studies Applying an Enzyme Ontogeny Database. Society of Toxicology 53rd Annual Meeting. March 23-27, Phoenix, AZ. (Poster)
Watford S., Edwards J., Linnenbrink M., Kancherla J., Martin M., 2014. Web Application Supporting Chemical Safety Decisions. Society of Toxicology 53rd Annual Meeting. March 23-27, Phoenix, AZ. (Poster)